The TD5 flywheel bolts are supposed to be stretched when they're installed, which is why new ones are recommended. A bit like the head bolts. So no wonder they'd deformed - they're meant to. As regards the bush, I suppose a new one is a good idea, but they don't wear out that quickly. I did a gearbox swap on mine in January 2021, and as the bush and dual mass flywheel had only done about 30 or 40 thousand miles I left them in for another round. I did however replace the clutch friction plate and clutch cover plate. Everything's still OK around a year and a half later, so it must have been OK.