Rub it down, go down to ali where there is bad corrosion and deal with it then prime it. Use acid etch primer if you want to get a really good primer coat or just use ordinary primer for a job that will be fine to be honest. Depends how much you want to spend and how long you want to spend on it and what sort of quality you want.
Use acid etch on any areas you do need to take back to metal, steel or ali. I got a big can of it from Halfords for my wing repair (rubbed it down to ali, pulled a dent, filled it) - or you can buy tins of it - if you're using a spray gun.